Spatial Transcriptomics - Part 4: Unsupervised InSituType
Alex Soupir Alex Soupir
4.39K subscribers
513 views
9

 Published On Oct 10, 2023

Welcome back everyone.

Today i try to quickly run through unsupervised clustering with Nanostring's InSituType package. If you find these helpful feel free to like and subscribe.

InSituType Package:
https://github.com/Nanostring-Biostat...

Some RNA expression profiles (ones that I didn't get to work right):
https://portal.brain-map.org/atlases-...

Will keep working on identifying a single cell list that can be used (hopefully not 7gb).

Script in video:
https://github.com/ACSoupir/SpatialTr...

GitHub: https://github.com/ACSoupir

Please consider contributing to my Patreon where I may do merch, gather ideas for future content, and have further discussions:
  / alexsoupir  

show more

Share/Embed