Leveraging RCSB PDB API's for Bioinformatics Analyses and Machine Learning
RCSBProteinDataBank RCSBProteinDataBank
87.2K subscribers
1,811 views
48

 Published On Oct 12, 2023

The lectures in this session will introduce you to the two main RCSB PDB APIs: Data API and Search API.

Please visit the PDB-101 Training Course page for access to the slides, documents, and other training materials: https://pdb101.rcsb.org/train/trainin...

Timestamps:
00:00:00 Welcome
00:07:55 Introduction to RCSB PDB APIs and data schemas
00:37:59 Data API
01:09:10 Search API
01:41:36 Search and Data API hands-on teaser

After completion of this session, you will

Understand the data structure and its relation to the PDBx/mmCIF dictionary and external data
Become familiarized with the two available interfaces in the Data API: GraphQL and REST
Write search queries with one or multiple search conditions to find PDB identifiers
Be familiar with search services beyond text: sequence, seqmotif, structure, chemical, strucmotif
Become acquainted with the Python client for Search API

show more

Share/Embed